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[SOLVED] Flatpaks "Unable to open lock file /usr/.ref: No such file or directory", some flatpaks affected

flatpak run org.qbittorrent.qBittorrent
bwrap: Unable to open lock file /app/.ref: No such file or directory

I tried flatpak repair, with --user and --system, that did not fix it, and I did a system re-install, or rather reinstalled all the packages Nothing worked.

I am using nixos on unstable, recently I broke the nix part of my system, and was advised to do a re-install, I did a re-install which involved usb booting into nixos, and running a command to reinstall all the packages and rebuild in my nix directory, but afterwards, no flatpak is running. There is a possibility it broke beforehand and I didnt notice that, but i think it might have been after the re-install.

Flatpak version: 1.16.1

Distro: NixOS

Distro version: /nix/store/8hx8jwa24q6rkzhca9iqy5ckk9rbphi1-source

Architecture: x86_64

EDIT: Some flatpaks run but alot of them dont with the same error

EDIT (x2) SOLVED: I think the issue might have been the kde platform, as the apps that crashed were on kde platform 6.8 or 6.9, possibly some broken version, most likely the platform and bwrap didnt play well with nixos, these commands worked, I ran this for users (not system). Possible system might work, point is, I dont have the issue anymore.

flatpak uninstall org.inkscape.Inkscape org.qbittorrent.qBittorrent com.obsproject.Studio org.kde.kdenlive org.wireshark.Wireshark com.prusa3d.PrusaSlicer com.rafaelmardojai.Blanket io.github.seadve.Mousai net.codelogistics.clicker org.freefilesync.FreeFileSync

flatpak uninstall --runtime org.kde.Platform//6.8
flatpak uninstall --runtime org.kde.Platform//6.9
flatpak uninstall --runtime org.gnome.Platform//48

flatpak uninstall --unused -y

flatpak repair --system
flatpak repair --user

flatpak install flathub org.inkscape.Inkscape
flatpak install flathub org.qbittorrent.qBittorrent
flatpak install flathub com.obsproject.Studio
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[SOLVED] Flatpaks "Unable to open lock file /usr/.ref: No such file or directory", some flatpaks affected | Spyke